mirror of
https://github.com/hwchase17/langchain
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a01e8473f8
- **Description:** Introduce a new parameter `graph_kwargs` to `RdfGraph` - parameters used to initialize the `rdflib.Graph` if `query_endpoint` is set. Also, do not set `rdflib.graph.DATASET_DEFAULT_GRAPH_ID` as default value for the `rdflib.Graph` `identifier` if `query_endpoint` is set. - **Issue:** N/A - **Dependencies:** N/A - **Twitter handle:** N/A
303 lines
10 KiB
Python
303 lines
10 KiB
Python
from __future__ import annotations
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from typing import (
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TYPE_CHECKING,
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Dict,
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List,
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Optional,
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)
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if TYPE_CHECKING:
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import rdflib
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prefixes = {
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"owl": """PREFIX owl: <http://www.w3.org/2002/07/owl#>\n""",
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"rdf": """PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n""",
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"rdfs": """PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n""",
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"xsd": """PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n""",
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}
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cls_query_rdf = prefixes["rdfs"] + (
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"""SELECT DISTINCT ?cls ?com\n"""
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"""WHERE { \n"""
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""" ?instance a ?cls . \n"""
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""" OPTIONAL { ?cls rdfs:comment ?com } \n"""
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"""}"""
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)
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cls_query_rdfs = prefixes["rdfs"] + (
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"""SELECT DISTINCT ?cls ?com\n"""
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"""WHERE { \n"""
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""" ?instance a/rdfs:subClassOf* ?cls . \n"""
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""" OPTIONAL { ?cls rdfs:comment ?com } \n"""
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"""}"""
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)
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cls_query_owl = prefixes["rdfs"] + (
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"""SELECT DISTINCT ?cls ?com\n"""
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"""WHERE { \n"""
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""" ?instance a/rdfs:subClassOf* ?cls . \n"""
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""" FILTER (isIRI(?cls)) . \n"""
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""" OPTIONAL { ?cls rdfs:comment ?com } \n"""
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"""}"""
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)
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rel_query_rdf = prefixes["rdfs"] + (
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"""SELECT DISTINCT ?rel ?com\n"""
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"""WHERE { \n"""
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""" ?subj ?rel ?obj . \n"""
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""" OPTIONAL { ?rel rdfs:comment ?com } \n"""
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"""}"""
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)
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rel_query_rdfs = (
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prefixes["rdf"]
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+ prefixes["rdfs"]
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+ (
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"""SELECT DISTINCT ?rel ?com\n"""
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"""WHERE { \n"""
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""" ?rel a/rdfs:subPropertyOf* rdf:Property . \n"""
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""" OPTIONAL { ?rel rdfs:comment ?com } \n"""
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"""}"""
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)
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)
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op_query_owl = (
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prefixes["rdfs"]
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+ prefixes["owl"]
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+ (
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"""SELECT DISTINCT ?op ?com\n"""
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"""WHERE { \n"""
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""" ?op a/rdfs:subPropertyOf* owl:ObjectProperty . \n"""
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""" OPTIONAL { ?op rdfs:comment ?com } \n"""
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"""}"""
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)
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)
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dp_query_owl = (
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prefixes["rdfs"]
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+ prefixes["owl"]
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+ (
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"""SELECT DISTINCT ?dp ?com\n"""
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"""WHERE { \n"""
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""" ?dp a/rdfs:subPropertyOf* owl:DatatypeProperty . \n"""
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""" OPTIONAL { ?dp rdfs:comment ?com } \n"""
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"""}"""
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)
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)
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class RdfGraph:
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"""RDFlib wrapper for graph operations.
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Modes:
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* local: Local file - can be queried and changed
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* online: Online file - can only be queried, changes can be stored locally
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* store: Triple store - can be queried and changed if update_endpoint available
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Together with a source file, the serialization should be specified.
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*Security note*: Make sure that the database connection uses credentials
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that are narrowly-scoped to only include necessary permissions.
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Failure to do so may result in data corruption or loss, since the calling
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code may attempt commands that would result in deletion, mutation
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of data if appropriately prompted or reading sensitive data if such
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data is present in the database.
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The best way to guard against such negative outcomes is to (as appropriate)
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limit the permissions granted to the credentials used with this tool.
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See https://python.langchain.com/docs/security for more information.
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"""
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def __init__(
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self,
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source_file: Optional[str] = None,
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serialization: Optional[str] = "ttl",
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query_endpoint: Optional[str] = None,
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update_endpoint: Optional[str] = None,
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standard: Optional[str] = "rdf",
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local_copy: Optional[str] = None,
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graph_kwargs: Optional[Dict] = None,
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) -> None:
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"""
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Set up the RDFlib graph
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:param source_file: either a path for a local file or a URL
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:param serialization: serialization of the input
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:param query_endpoint: SPARQL endpoint for queries, read access
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:param update_endpoint: SPARQL endpoint for UPDATE queries, write access
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:param standard: RDF, RDFS, or OWL
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:param local_copy: new local copy for storing changes
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:param graph_kwargs: Additional rdflib.Graph specific kwargs
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that will be used to initialize it,
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if query_endpoint is provided.
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"""
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self.source_file = source_file
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self.serialization = serialization
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self.query_endpoint = query_endpoint
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self.update_endpoint = update_endpoint
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self.standard = standard
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self.local_copy = local_copy
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try:
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import rdflib
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from rdflib.plugins.stores import sparqlstore
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except ImportError:
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raise ValueError(
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"Could not import rdflib python package. "
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"Please install it with `pip install rdflib`."
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)
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if self.standard not in (supported_standards := ("rdf", "rdfs", "owl")):
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raise ValueError(
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f"Invalid standard. Supported standards are: {supported_standards}."
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)
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if (
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not source_file
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and not query_endpoint
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or source_file
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and (query_endpoint or update_endpoint)
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):
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raise ValueError(
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"Could not unambiguously initialize the graph wrapper. "
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"Specify either a file (local or online) via the source_file "
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"or a triple store via the endpoints."
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)
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if source_file:
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if source_file.startswith("http"):
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self.mode = "online"
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else:
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self.mode = "local"
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if self.local_copy is None:
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self.local_copy = self.source_file
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self.graph = rdflib.Graph()
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self.graph.parse(source_file, format=self.serialization)
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if query_endpoint:
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self.mode = "store"
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if not update_endpoint:
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self._store = sparqlstore.SPARQLStore()
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self._store.open(query_endpoint)
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else:
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self._store = sparqlstore.SPARQLUpdateStore()
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self._store.open((query_endpoint, update_endpoint))
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graph_kwargs = graph_kwargs or {}
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self.graph = rdflib.Graph(self._store, **graph_kwargs)
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# Verify that the graph was loaded
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if not len(self.graph):
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raise AssertionError("The graph is empty.")
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# Set schema
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self.schema = ""
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self.load_schema()
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@property
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def get_schema(self) -> str:
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"""
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Returns the schema of the graph database.
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"""
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return self.schema
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def query(
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self,
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query: str,
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) -> List[rdflib.query.ResultRow]:
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"""
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Query the graph.
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"""
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from rdflib.exceptions import ParserError
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from rdflib.query import ResultRow
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try:
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res = self.graph.query(query)
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except ParserError as e:
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raise ValueError("Generated SPARQL statement is invalid\n" f"{e}")
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return [r for r in res if isinstance(r, ResultRow)]
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def update(
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self,
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query: str,
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) -> None:
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"""
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Update the graph.
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"""
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from rdflib.exceptions import ParserError
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try:
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self.graph.update(query)
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except ParserError as e:
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raise ValueError("Generated SPARQL statement is invalid\n" f"{e}")
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if self.local_copy:
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self.graph.serialize(
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destination=self.local_copy, format=self.local_copy.split(".")[-1]
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)
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else:
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raise ValueError("No target file specified for saving the updated file.")
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@staticmethod
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def _get_local_name(iri: str) -> str:
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if "#" in iri:
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local_name = iri.split("#")[-1]
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elif "/" in iri:
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local_name = iri.split("/")[-1]
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else:
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raise ValueError(f"Unexpected IRI '{iri}', contains neither '#' nor '/'.")
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return local_name
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def _res_to_str(self, res: rdflib.query.ResultRow, var: str) -> str:
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return (
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"<"
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+ str(res[var])
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+ "> ("
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+ self._get_local_name(res[var])
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+ ", "
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+ str(res["com"])
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+ ")"
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)
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def load_schema(self) -> None:
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"""
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Load the graph schema information.
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"""
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def _rdf_s_schema(
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classes: List[rdflib.query.ResultRow],
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relationships: List[rdflib.query.ResultRow],
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) -> str:
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return (
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f"In the following, each IRI is followed by the local name and "
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f"optionally its description in parentheses. \n"
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f"The RDF graph supports the following node types:\n"
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f'{", ".join([self._res_to_str(r, "cls") for r in classes])}\n'
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f"The RDF graph supports the following relationships:\n"
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f'{", ".join([self._res_to_str(r, "rel") for r in relationships])}\n'
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)
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if self.standard == "rdf":
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clss = self.query(cls_query_rdf)
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rels = self.query(rel_query_rdf)
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self.schema = _rdf_s_schema(clss, rels)
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elif self.standard == "rdfs":
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clss = self.query(cls_query_rdfs)
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rels = self.query(rel_query_rdfs)
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self.schema = _rdf_s_schema(clss, rels)
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elif self.standard == "owl":
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clss = self.query(cls_query_owl)
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ops = self.query(op_query_owl)
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dps = self.query(dp_query_owl)
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self.schema = (
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f"In the following, each IRI is followed by the local name and "
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f"optionally its description in parentheses. \n"
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f"The OWL graph supports the following node types:\n"
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f'{", ".join([self._res_to_str(r, "cls") for r in clss])}\n'
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f"The OWL graph supports the following object properties, "
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f"i.e., relationships between objects:\n"
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f'{", ".join([self._res_to_str(r, "op") for r in ops])}\n'
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f"The OWL graph supports the following data properties, "
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f"i.e., relationships between objects and literals:\n"
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f'{", ".join([self._res_to_str(r, "dp") for r in dps])}\n'
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)
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else:
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raise ValueError(f"Mode '{self.standard}' is currently not supported.")
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