Commit Graph

5 Commits (d2cf0d16b3e814e2bc86472e309c7ad81bf36cdb)

Author SHA1 Message Date
corranmac 20c6ade2fc
Grobid parser for Scientific Articles from PDF (#6729)
### Scientific Article PDF Parsing via Grobid

`Description:`
This change adds the GrobidParser class, which uses the Grobid library
to parse scientific articles into a universal XML format containing the
article title, references, sections, section text etc. The GrobidParser
uses a local Grobid server to return PDFs document as XML and parses the
XML to optionally produce documents of individual sentences or of whole
paragraphs. Metadata includes the text, paragraph number, pdf relative
bboxes, pages (text may overlap over two pages), section title
(Introduction, Methodology etc), section_number (i.e 1.1, 2.3), the
title of the paper and finally the file path.
      
Grobid parsing is useful beyond standard pdf parsing as it accurately
outputs sections and paragraphs within them. This allows for
post-fitering of results for specific sections i.e. limiting results to
the methodology section or results. While sections are split via
headings, ideally they could be classified specifically into
introduction, methodology, results, discussion, conclusion. I'm
currently experimenting with chatgpt-3.5 for this function, which could
later be implemented as a textsplitter.

`Dependencies:`
For use, the grobid repo must be cloned and Java must be installed, for
colab this is:

```
!apt-get install -y openjdk-11-jdk -q
!update-alternatives --set java /usr/lib/jvm/java-11-openjdk-amd64/bin/java
!git clone https://github.com/kermitt2/grobid.git
os.environ["JAVA_HOME"] = "/usr/lib/jvm/java-11-openjdk-amd64"
os.chdir('grobid')
!./gradlew clean install
```

Once installed the server is ran on localhost:8070 via
```
get_ipython().system_raw('nohup ./gradlew run > grobid.log 2>&1 &')
```

@rlancemartin, @eyurtsev

Twitter Handle: @Corranmac

Grobid Demo Notebook is
[here](https://colab.research.google.com/drive/1X-St_mQRmmm8YWtct_tcJNtoktbdGBmd?usp=sharing).

---------

Co-authored-by: rlm <pexpresss31@gmail.com>
1 year ago
Cristóbal Carnero Liñán e494b0a09f
feat (documents): add a source code loader based on AST manipulation (#6486)
#### Summary

A new approach to loading source code is implemented:

Each top-level function and class in the code is loaded into separate
documents. Then, an additional document is created with the top-level
code, but without the already loaded functions and classes.

This could improve the accuracy of QA chains over source code.

For instance, having this script:

```
class MyClass:
    def __init__(self, name):
        self.name = name

    def greet(self):
        print(f"Hello, {self.name}!")

def main():
    name = input("Enter your name: ")
    obj = MyClass(name)
    obj.greet()

if __name__ == '__main__':
    main()
```

The loader will create three documents with this content:

First document:
```
class MyClass:
    def __init__(self, name):
        self.name = name

    def greet(self):
        print(f"Hello, {self.name}!")
```

Second document:
```
def main():
    name = input("Enter your name: ")
    obj = MyClass(name)
    obj.greet()
```

Third document:
```
# Code for: class MyClass:

# Code for: def main():

if __name__ == '__main__':
    main()
```

A threshold parameter is added to control whether small scripts are
split in this way or not.

At this moment, only Python and JavaScript are supported. The
appropriate parser is determined by examining the file extension.

#### Tests

This PR adds:

- Unit tests
- Integration tests

#### Dependencies

Only one dependency was added as optional (needed for the JavaScript
parser).

#### Documentation

A notebook is added showing how the loader can be used.

#### Who can review?

@eyurtsev @hwchase17

---------

Co-authored-by: rlm <pexpresss31@gmail.com>
1 year ago
Lance Martin aea090045b
Create OpenAIWhisperParser for generating Documents from audio files (#5580)
# OpenAIWhisperParser

This PR creates a new parser, `OpenAIWhisperParser`, that uses the
[OpenAI Whisper
model](https://platform.openai.com/docs/guides/speech-to-text/quickstart)
to perform transcription of audio files to text (`Documents`). Please
see the notebook for usage.
1 year ago
Eugene Yurtsev 0dc304ca80
Add html parsers (#4874)
# Add bs4 html parser

* Some minor refactors
* Extract the bs4 html parsing code from the bs html loader
* Move some tests from integration tests to unit tests
1 year ago
Raduan Al-Shedivat 00c6ec8a2d
fix(document_loaders/telegram): fix pandas calls + add tests (#4806)
# Fix Telegram API loader + add tests.
I was testing this integration and it was broken with next error:
```python
message_threads = loader._get_message_threads(df)
KeyError: False
```
Also, this particular loader didn't have any tests / related group in
poetry, so I added those as well.

@hwchase17 / @eyurtsev please take a look on this fix PR.

---------

Co-authored-by: Dev 2049 <dev.dev2049@gmail.com>
1 year ago