**Description: a description of the change**
Fixed `make docs_build` and related scripts which caused errors. There
are several changes.
First, I made the build of the documentation and the API Reference into
two separate commands. This is because it takes less time to build. The
commands for documents are `make docs_build`, `make docs_clean`, and
`make docs_linkcheck`. The commands for API Reference are `make
api_docs_build`, `api_docs_clean`, and `api_docs_linkcheck`.
It looked like `docs/.local_build.sh` could be used to build the
documentation, so I used that. Since `.local_build.sh` was also building
API Rerefence internally, I removed that process. `.local_build.sh` also
added some Bash options to stop in error or so. Futher more added `cd
"${SCRIPT_DIR}"` at the beginning so that the script will work no matter
which directory it is executed in.
`docs/api_reference/api_reference.rst` is removed, because which is
generated by `docs/api_reference/create_api_rst.py`, and added it to
.gitignore.
Finally, the description of CONTRIBUTING.md was modified.
**Issue: the issue # it fixes (if applicable)**
https://github.com/hwchase17/langchain/issues/6413
**Dependencies: any dependencies required for this change**
`nbdoc` was missing in group docs so it was added. I installed it with
the `poetry add --group docs nbdoc` command. I am concerned if any
modifications are needed to poetry.lock. I would greatly appreciate it
if you could pay close attention to this file during the review.
**Tag maintainer**
- General / Misc / if you don't know who to tag: @baskaryan
If this PR needs any additional changes, I'll be happy to make them!
---------
Co-authored-by: Bagatur <baskaryan@gmail.com>
### Scientific Article PDF Parsing via Grobid
`Description:`
This change adds the GrobidParser class, which uses the Grobid library
to parse scientific articles into a universal XML format containing the
article title, references, sections, section text etc. The GrobidParser
uses a local Grobid server to return PDFs document as XML and parses the
XML to optionally produce documents of individual sentences or of whole
paragraphs. Metadata includes the text, paragraph number, pdf relative
bboxes, pages (text may overlap over two pages), section title
(Introduction, Methodology etc), section_number (i.e 1.1, 2.3), the
title of the paper and finally the file path.
Grobid parsing is useful beyond standard pdf parsing as it accurately
outputs sections and paragraphs within them. This allows for
post-fitering of results for specific sections i.e. limiting results to
the methodology section or results. While sections are split via
headings, ideally they could be classified specifically into
introduction, methodology, results, discussion, conclusion. I'm
currently experimenting with chatgpt-3.5 for this function, which could
later be implemented as a textsplitter.
`Dependencies:`
For use, the grobid repo must be cloned and Java must be installed, for
colab this is:
```
!apt-get install -y openjdk-11-jdk -q
!update-alternatives --set java /usr/lib/jvm/java-11-openjdk-amd64/bin/java
!git clone https://github.com/kermitt2/grobid.git
os.environ["JAVA_HOME"] = "/usr/lib/jvm/java-11-openjdk-amd64"
os.chdir('grobid')
!./gradlew clean install
```
Once installed the server is ran on localhost:8070 via
```
get_ipython().system_raw('nohup ./gradlew run > grobid.log 2>&1 &')
```
@rlancemartin, @eyurtsev
Twitter Handle: @Corranmac
Grobid Demo Notebook is
[here](https://colab.research.google.com/drive/1X-St_mQRmmm8YWtct_tcJNtoktbdGBmd?usp=sharing).
---------
Co-authored-by: rlm <pexpresss31@gmail.com>
