From 09587a32014bb3fd9233d7a567c8935c17fe901e Mon Sep 17 00:00:00 2001 From: Eugene Yurtsev Date: Mon, 15 May 2023 14:21:05 -0400 Subject: [PATCH] Clean up tests for pdf parsers (#4595) # Organize tests for pdf parsers Clean up tests for pdf parsers, remove duplicate tests, convert to unit tests. --- langchain/document_loaders/parsers/pdf.py | 20 +- poetry.lock | 592 ++++++++++-------- pyproject.toml | 4 + .../parsers/test_pdf_parsers.py | 15 + 4 files changed, 353 insertions(+), 278 deletions(-) diff --git a/langchain/document_loaders/parsers/pdf.py b/langchain/document_loaders/parsers/pdf.py index f1f75280b2..3e0283738d 100644 --- a/langchain/document_loaders/parsers/pdf.py +++ b/langchain/document_loaders/parsers/pdf.py @@ -93,12 +93,20 @@ class PyPDFium2Parser(BaseBlobParser): """Lazily parse the blob.""" import pypdfium2 - with blob.as_bytes_io() as f: - pdf_reader = pypdfium2.PdfDocument(f) - for page_number, page in enumerate(pdf_reader): - content = page.get_textpage().get_text_range() - metadata = {"source": blob.source, "page": page_number} - yield Document(page_content=content, metadata=metadata) + # pypdfium2 is really finicky with respect to closing things, + # if done incorrectly creates seg faults. + with blob.as_bytes_io() as file_path: + pdf_reader = pypdfium2.PdfDocument(file_path, autoclose=True) + try: + for page_number, page in enumerate(pdf_reader): + text_page = page.get_textpage() + content = text_page.get_text_range() + text_page.close() + page.close() + metadata = {"source": blob.source, "page": page_number} + yield Document(page_content=content, metadata=metadata) + finally: + pdf_reader.close() class PDFPlumberParser(BaseBlobParser): diff --git a/poetry.lock b/poetry.lock index bf5dc21463..f68f758240 100644 --- a/poetry.lock +++ b/poetry.lock @@ -14,14 +14,14 @@ files = [ [[package]] name = "aioboto3" -version = "11.1.0" +version = "11.2.0" description = "Async boto3 wrapper" category = "main" optional = false 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{file = "weaviate_client-3.17.1-py3-none-any.whl", hash = "sha256:0c86f4d5fcb155efd0888515c8caa20364241c0df01dead361ce0c023dbc5da9"}, + {file = "weaviate-client-3.18.0.tar.gz", hash = "sha256:423a526518a32505c5293328e5f252e6cbbf20e4b3124733f70d10fc0d6823c9"}, + {file = "weaviate_client-3.18.0-py3-none-any.whl", hash = "sha256:42b324286a4b4436317e5d2c6ba48c07da6cf01518efdd47ee097e7a8cc7584c"}, ] [package.dependencies] @@ -9706,14 +9754,14 @@ files = [ [[package]] name = "werkzeug" -version = "2.3.3" +version = "2.3.4" description = "The comprehensive WSGI web application library." category = "main" optional = true python-versions = ">=3.8" files = [ - {file = "Werkzeug-2.3.3-py3-none-any.whl", hash = "sha256:4866679a0722de00796a74086238bb3b98d90f423f05de039abb09315487254a"}, - {file = "Werkzeug-2.3.3.tar.gz", hash = "sha256:a987caf1092edc7523edb139edb20c70571c4a8d5eed02e0b547b4739174d091"}, + {file = "Werkzeug-2.3.4-py3-none-any.whl", hash = "sha256:48e5e61472fee0ddee27ebad085614ebedb7af41e88f687aaf881afb723a162f"}, + {file = "Werkzeug-2.3.4.tar.gz", hash = "sha256:1d5a58e0377d1fe39d061a5de4469e414e78ccb1e1e59c0f5ad6fa1c36c52b76"}, ] [package.dependencies] @@ -10091,7 +10139,7 @@ all = ["O365", "aleph-alpha-client", "anthropic", "arxiv", "atlassian-python-api azure = ["azure-core", "azure-cosmos", "azure-identity", "openai"] cohere = ["cohere"] embeddings = ["sentence-transformers"] -extended-testing = ["jq", "lxml", "pdfminer-six", "pypdf", "tqdm"] +extended-testing = ["jq", "lxml", "pdfminer-six", "pymupdf", "pypdf", "pypdfium2", "tqdm"] hnswlib = ["docarray", "hnswlib", "protobuf"] in-memory-store = ["docarray"] llms = ["anthropic", "cohere", "huggingface_hub", "manifest-ml", "nlpcloud", "openai", "torch", "transformers"] @@ -10101,4 +10149,4 @@ qdrant = ["qdrant-client"] [metadata] lock-version = "2.0" python-versions = ">=3.8.1,<4.0" -content-hash = "c84dcaf4bf2fb334d81cacfdfc5ca7f22924f07c2adc479f92d05c73c3fbeee1" +content-hash = "8c327ab0b84d7d2c61d429154a604db0775ae2d40b66efbdf9dbee9bdc8a245c" diff --git a/pyproject.toml b/pyproject.toml index ba4f551885..1ec73647d3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,6 +83,8 @@ docarray = {version="^0.31.0", optional=true} protobuf = {version="3.19", optional=true} hnswlib = {version="^0.7.0", optional=true} lxml = {version = "^4.9.2", optional = true} +pymupdf = {version = "^1.22.3", optional = true} +pypdfium2 = {version = "^4.10.0", optional = true} [tool.poetry.group.docs.dependencies] @@ -177,6 +179,8 @@ extended_testing = [ "jq", "pdfminer.six", "pypdf", + "pymupdf", + "pypdfium2", "tqdm", "lxml", ] diff --git a/tests/unit_tests/document_loader/parsers/test_pdf_parsers.py b/tests/unit_tests/document_loader/parsers/test_pdf_parsers.py index 7737ab9317..47059507fc 100644 --- a/tests/unit_tests/document_loader/parsers/test_pdf_parsers.py +++ b/tests/unit_tests/document_loader/parsers/test_pdf_parsers.py @@ -7,6 +7,8 @@ from langchain.document_loaders.base import BaseBlobParser from langchain.document_loaders.blob_loaders import Blob from langchain.document_loaders.parsers.pdf import ( PDFMinerParser, + PyMuPDFParser, + PyPDFium2Parser, PyPDFParser, ) from tests.data import HELLO_PDF, LAYOUT_PARSER_PAPER_PDF @@ -62,3 +64,16 @@ def test_pdfminer_parser() -> None: """Test PDFMiner parser.""" # Does not follow defaults to split by page. _assert_with_parser(PDFMinerParser(), splits_by_page=False) + + +@pytest.mark.requires("fitz") # package is PyMuPDF +def test_pymupdf_loader() -> None: + """Test PyMuPDF loader.""" + _assert_with_parser(PyMuPDFParser()) + + +@pytest.mark.requires("pypdfium2") +def test_pypdfium2_parser() -> None: + """Test PyPDFium2 parser.""" + # Does not follow defaults to split by page. + _assert_with_parser(PyPDFium2Parser())