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langchain/libs/partners/mongodb/langchain_mongodb/utils.py

88 lines
3.1 KiB
Python

mongodb[minor]: MongoDB Partner Package -- Porting MongoDBAtlasVectorSearch (#17652) This PR migrates the existing MongoDBAtlasVectorSearch abstraction from the `langchain_community` section to the partners package section of the codebase. - [x] Run the partner package script as advised in the partner-packages documentation. - [x] Add Unit Tests - [x] Migrate Integration Tests - [x] Refactor `MongoDBAtlasVectorStore` (autogenerated) to `MongoDBAtlasVectorSearch` - [x] ~Remove~ deprecate the old `langchain_community` VectorStore references. ## Additional Callouts - Implemented the `delete` method - Included any missing async function implementations - `amax_marginal_relevance_search_by_vector` - `adelete` - Added new Unit Tests that test for functionality of `MongoDBVectorSearch` methods - Removed [`del res[self._embedding_key]`](https://github.com/langchain-ai/langchain/blob/e0c81e1cb0ede673a69aae6434e17e34868c3bcc/libs/community/langchain_community/vectorstores/mongodb_atlas.py#L218) in `_similarity_search_with_score` function as it would make the `maximal_marginal_relevance` function fail otherwise. The `Document` needs to store the embedding key in metadata to work. Checklist: - [x] PR title: Please title your PR "package: description", where "package" is whichever of langchain, community, core, experimental, etc. is being modified. Use "docs: ..." for purely docs changes, "templates: ..." for template changes, "infra: ..." for CI changes. - Example: "community: add foobar LLM" - [x] PR message - [x] Pass lint and test: Run `make format`, `make lint` and `make test` from the root of the package(s) you've modified to check that you're passing lint and testing. See contribution guidelines for more information on how to write/run tests, lint, etc: https://python.langchain.com/docs/contributing/ - [x] Add tests and docs: If you're adding a new integration, please include 1. Existing tests supplied in docs/docs do not change. Updated docstrings for new functions like `delete` 2. an example notebook showing its use. It lives in `docs/docs/integrations` directory. (This already exists) If no one reviews your PR within a few days, please @-mention one of baskaryan, efriis, eyurtsev, hwchase17. --------- Co-authored-by: Steven Silvester <steven.silvester@ieee.org> Co-authored-by: Erick Friis <erick@langchain.dev>
7 months ago
"""
Tools for the Maximal Marginal Relevance (MMR) reranking.
Duplicated from langchain_community to avoid cross-dependencies.
Functions "maximal_marginal_relevance" and "cosine_similarity"
are duplicated in this utility respectively from modules:
- "libs/community/langchain_community/vectorstores/utils.py"
- "libs/community/langchain_community/utils/math.py"
"""
import logging
from typing import List, Union
import numpy as np
logger = logging.getLogger(__name__)
Matrix = Union[List[List[float]], List[np.ndarray], np.ndarray]
def cosine_similarity(X: Matrix, Y: Matrix) -> np.ndarray:
"""Row-wise cosine similarity between two equal-width matrices."""
if len(X) == 0 or len(Y) == 0:
return np.array([])
X = np.array(X)
Y = np.array(Y)
if X.shape[1] != Y.shape[1]:
raise ValueError(
f"Number of columns in X and Y must be the same. X has shape {X.shape} "
f"and Y has shape {Y.shape}."
)
try:
import simsimd as simd # type: ignore
X = np.array(X, dtype=np.float32)
Y = np.array(Y, dtype=np.float32)
Z = 1 - simd.cdist(X, Y, metric="cosine")
if isinstance(Z, float):
return np.array([Z])
return np.array(Z)
mongodb[minor]: MongoDB Partner Package -- Porting MongoDBAtlasVectorSearch (#17652) This PR migrates the existing MongoDBAtlasVectorSearch abstraction from the `langchain_community` section to the partners package section of the codebase. - [x] Run the partner package script as advised in the partner-packages documentation. - [x] Add Unit Tests - [x] Migrate Integration Tests - [x] Refactor `MongoDBAtlasVectorStore` (autogenerated) to `MongoDBAtlasVectorSearch` - [x] ~Remove~ deprecate the old `langchain_community` VectorStore references. ## Additional Callouts - Implemented the `delete` method - Included any missing async function implementations - `amax_marginal_relevance_search_by_vector` - `adelete` - Added new Unit Tests that test for functionality of `MongoDBVectorSearch` methods - Removed [`del res[self._embedding_key]`](https://github.com/langchain-ai/langchain/blob/e0c81e1cb0ede673a69aae6434e17e34868c3bcc/libs/community/langchain_community/vectorstores/mongodb_atlas.py#L218) in `_similarity_search_with_score` function as it would make the `maximal_marginal_relevance` function fail otherwise. The `Document` needs to store the embedding key in metadata to work. Checklist: - [x] PR title: Please title your PR "package: description", where "package" is whichever of langchain, community, core, experimental, etc. is being modified. Use "docs: ..." for purely docs changes, "templates: ..." for template changes, "infra: ..." for CI changes. - Example: "community: add foobar LLM" - [x] PR message - [x] Pass lint and test: Run `make format`, `make lint` and `make test` from the root of the package(s) you've modified to check that you're passing lint and testing. See contribution guidelines for more information on how to write/run tests, lint, etc: https://python.langchain.com/docs/contributing/ - [x] Add tests and docs: If you're adding a new integration, please include 1. Existing tests supplied in docs/docs do not change. Updated docstrings for new functions like `delete` 2. an example notebook showing its use. It lives in `docs/docs/integrations` directory. (This already exists) If no one reviews your PR within a few days, please @-mention one of baskaryan, efriis, eyurtsev, hwchase17. --------- Co-authored-by: Steven Silvester <steven.silvester@ieee.org> Co-authored-by: Erick Friis <erick@langchain.dev>
7 months ago
except ImportError:
logger.info(
"Unable to import simsimd, defaulting to NumPy implementation. If you want "
"to use simsimd please install with `pip install simsimd`."
)
X_norm = np.linalg.norm(X, axis=1)
Y_norm = np.linalg.norm(Y, axis=1)
# Ignore divide by zero errors run time warnings as those are handled below.
with np.errstate(divide="ignore", invalid="ignore"):
similarity = np.dot(X, Y.T) / np.outer(X_norm, Y_norm)
similarity[np.isnan(similarity) | np.isinf(similarity)] = 0.0
return similarity
def maximal_marginal_relevance(
query_embedding: np.ndarray,
embedding_list: list,
lambda_mult: float = 0.5,
k: int = 4,
) -> List[int]:
"""Calculate maximal marginal relevance."""
if min(k, len(embedding_list)) <= 0:
return []
if query_embedding.ndim == 1:
query_embedding = np.expand_dims(query_embedding, axis=0)
similarity_to_query = cosine_similarity(query_embedding, embedding_list)[0]
most_similar = int(np.argmax(similarity_to_query))
idxs = [most_similar]
selected = np.array([embedding_list[most_similar]])
while len(idxs) < min(k, len(embedding_list)):
best_score = -np.inf
idx_to_add = -1
similarity_to_selected = cosine_similarity(embedding_list, selected)
for i, query_score in enumerate(similarity_to_query):
if i in idxs:
continue
redundant_score = max(similarity_to_selected[i])
equation_score = (
lambda_mult * query_score - (1 - lambda_mult) * redundant_score
)
if equation_score > best_score:
best_score = equation_score
idx_to_add = i
idxs.append(idx_to_add)
selected = np.append(selected, [embedding_list[idx_to_add]], axis=0)
return idxs