2023-12-11 21:53:30 +00:00
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"""Math utils."""
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import logging
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from typing import List, Optional, Tuple, Union
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import numpy as np
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logger = logging.getLogger(__name__)
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Matrix = Union[List[List[float]], List[np.ndarray], np.ndarray]
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def cosine_similarity(X: Matrix, Y: Matrix) -> np.ndarray:
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"""Row-wise cosine similarity between two equal-width matrices."""
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if len(X) == 0 or len(Y) == 0:
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return np.array([])
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X = np.array(X)
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Y = np.array(Y)
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if X.shape[1] != Y.shape[1]:
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raise ValueError(
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f"Number of columns in X and Y must be the same. X has shape {X.shape} "
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f"and Y has shape {Y.shape}."
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)
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try:
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import simsimd as simd
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X = np.array(X, dtype=np.float32)
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Y = np.array(Y, dtype=np.float32)
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community, milvus, pinecone, qdrant, mongo: Broadcast operation failure while using simsimd beyond v3.7.7 (#22271)
- [ ] **Packages affected**:
- community: fix `cosine_similarity` to support simsimd beyond 3.7.7
- partners/milvus: fix `cosine_similarity` to support simsimd beyond
3.7.7
- partners/mongodb: fix `cosine_similarity` to support simsimd beyond
3.7.7
- partners/pinecone: fix `cosine_similarity` to support simsimd beyond
3.7.7
- partners/qdrant: fix `cosine_similarity` to support simsimd beyond
3.7.7
- [ ] **Broadcast operation failure while using simsimd beyond v3.7.7**:
- **Description:** I was using simsimd 4.3.1 and the unsupported operand
type issue popped up. When I checked out the repo and ran the tests,
they failed as well (have attached a screenshot for that). Looks like it
is a variant of https://github.com/langchain-ai/langchain/issues/18022 .
Prior to 3.7.7, simd.cdist returned an ndarray but now it returns
simsimd.DistancesTensor which is ineligible for a broadcast operation
with numpy. With this change, it also remove the need to explicitly cast
`Z` to numpy array
- **Issue:** #19905
- **Dependencies:** No
- **Twitter handle:** https://x.com/GetzJoydeep
<img width="1622" alt="Screenshot 2024-05-29 at 2 50 00 PM"
src="https://github.com/langchain-ai/langchain/assets/31132555/fb27b383-a9ae-4a6f-b355-6d503b72db56">
- [ ] **Considerations**:
1. I started with community but since similar changes were there in
Milvus, MongoDB, Pinecone, and QDrant so I modified their files as well.
If touching multiple packages in one PR is not the norm, then I can
remove them from this PR and raise separate ones
2. I have run and verified that the tests work. Since, only MongoDB had
tests, I ran theirs and verified it works as well. Screenshots attached
:
<img width="1573" alt="Screenshot 2024-05-29 at 2 52 13 PM"
src="https://github.com/langchain-ai/langchain/assets/31132555/ce87d1ea-19b6-4900-9384-61fbc1a30de9">
<img width="1614" alt="Screenshot 2024-05-29 at 3 33 51 PM"
src="https://github.com/langchain-ai/langchain/assets/31132555/6ce1d679-db4c-4291-8453-01028ab2dca5">
I have added a test for simsimd. I feel it may not go well with the
CI/CD setup as installing simsimd is not a dependency requirement. I
have just imported simsimd to ensure simsimd cosine similarity is
invoked. However, its not a good approach. Suggestions are welcome and I
can make the required changes on the PR. Please provide guidance on the
same as I am new to the community.
---------
Co-authored-by: Bagatur <baskaryan@gmail.com>
Co-authored-by: Bagatur <22008038+baskaryan@users.noreply.github.com>
2024-06-04 17:36:31 +00:00
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Z = 1 - np.array(simd.cdist(X, Y, metric="cosine"))
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return Z
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2023-12-11 21:53:30 +00:00
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except ImportError:
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2024-03-28 03:11:02 +00:00
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logger.debug(
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2023-12-11 21:53:30 +00:00
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"Unable to import simsimd, defaulting to NumPy implementation. If you want "
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"to use simsimd please install with `pip install simsimd`."
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)
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X_norm = np.linalg.norm(X, axis=1)
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Y_norm = np.linalg.norm(Y, axis=1)
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# Ignore divide by zero errors run time warnings as those are handled below.
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with np.errstate(divide="ignore", invalid="ignore"):
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similarity = np.dot(X, Y.T) / np.outer(X_norm, Y_norm)
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similarity[np.isnan(similarity) | np.isinf(similarity)] = 0.0
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return similarity
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def cosine_similarity_top_k(
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X: Matrix,
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Y: Matrix,
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top_k: Optional[int] = 5,
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score_threshold: Optional[float] = None,
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) -> Tuple[List[Tuple[int, int]], List[float]]:
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"""Row-wise cosine similarity with optional top-k and score threshold filtering.
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Args:
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X: Matrix.
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Y: Matrix, same width as X.
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top_k: Max number of results to return.
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score_threshold: Minimum cosine similarity of results.
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Returns:
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Tuple of two lists. First contains two-tuples of indices (X_idx, Y_idx),
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second contains corresponding cosine similarities.
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"""
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if len(X) == 0 or len(Y) == 0:
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return [], []
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score_array = cosine_similarity(X, Y)
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score_threshold = score_threshold or -1.0
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score_array[score_array < score_threshold] = 0
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top_k = min(top_k or len(score_array), np.count_nonzero(score_array))
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top_k_idxs = np.argpartition(score_array, -top_k, axis=None)[-top_k:]
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top_k_idxs = top_k_idxs[np.argsort(score_array.ravel()[top_k_idxs])][::-1]
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ret_idxs = np.unravel_index(top_k_idxs, score_array.shape)
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scores = score_array.ravel()[top_k_idxs].tolist()
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return list(zip(*ret_idxs)), scores # type: ignore
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