2023-12-11 21:53:30 +00:00
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from __future__ import annotations
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import logging
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from typing import (
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TYPE_CHECKING,
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Any,
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2023-12-16 00:49:21 +00:00
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Callable,
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2023-12-11 21:53:30 +00:00
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Dict,
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Generator,
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Iterable,
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List,
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Optional,
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Tuple,
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TypeVar,
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Union,
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)
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import numpy as np
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mongodb[minor]: MongoDB Partner Package -- Porting MongoDBAtlasVectorSearch (#17652)
This PR migrates the existing MongoDBAtlasVectorSearch abstraction from
the `langchain_community` section to the partners package section of the
codebase.
- [x] Run the partner package script as advised in the partner-packages
documentation.
- [x] Add Unit Tests
- [x] Migrate Integration Tests
- [x] Refactor `MongoDBAtlasVectorStore` (autogenerated) to
`MongoDBAtlasVectorSearch`
- [x] ~Remove~ deprecate the old `langchain_community` VectorStore
references.
## Additional Callouts
- Implemented the `delete` method
- Included any missing async function implementations
- `amax_marginal_relevance_search_by_vector`
- `adelete`
- Added new Unit Tests that test for functionality of
`MongoDBVectorSearch` methods
- Removed [`del
res[self._embedding_key]`](https://github.com/langchain-ai/langchain/blob/e0c81e1cb0ede673a69aae6434e17e34868c3bcc/libs/community/langchain_community/vectorstores/mongodb_atlas.py#L218)
in `_similarity_search_with_score` function as it would make the
`maximal_marginal_relevance` function fail otherwise. The `Document`
needs to store the embedding key in metadata to work.
Checklist:
- [x] PR title: Please title your PR "package: description", where
"package" is whichever of langchain, community, core, experimental, etc.
is being modified. Use "docs: ..." for purely docs changes, "templates:
..." for template changes, "infra: ..." for CI changes.
- Example: "community: add foobar LLM"
- [x] PR message
- [x] Pass lint and test: Run `make format`, `make lint` and `make test`
from the root of the package(s) you've modified to check that you're
passing lint and testing. See contribution guidelines for more
information on how to write/run tests, lint, etc:
https://python.langchain.com/docs/contributing/
- [x] Add tests and docs: If you're adding a new integration, please
include
1. Existing tests supplied in docs/docs do not change. Updated
docstrings for new functions like `delete`
2. an example notebook showing its use. It lives in
`docs/docs/integrations` directory. (This already exists)
If no one reviews your PR within a few days, please @-mention one of
baskaryan, efriis, eyurtsev, hwchase17.
---------
Co-authored-by: Steven Silvester <steven.silvester@ieee.org>
Co-authored-by: Erick Friis <erick@langchain.dev>
2024-02-29 23:09:48 +00:00
|
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from langchain_core._api.deprecation import deprecated
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2023-12-11 21:53:30 +00:00
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from langchain_core.documents import Document
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from langchain_core.embeddings import Embeddings
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from langchain_core.vectorstores import VectorStore
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from langchain_community.vectorstores.utils import maximal_marginal_relevance
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if TYPE_CHECKING:
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from pymongo.collection import Collection
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MongoDBDocumentType = TypeVar("MongoDBDocumentType", bound=Dict[str, Any])
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logger = logging.getLogger(__name__)
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DEFAULT_INSERT_BATCH_SIZE = 100
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mongodb[minor]: MongoDB Partner Package -- Porting MongoDBAtlasVectorSearch (#17652)
This PR migrates the existing MongoDBAtlasVectorSearch abstraction from
the `langchain_community` section to the partners package section of the
codebase.
- [x] Run the partner package script as advised in the partner-packages
documentation.
- [x] Add Unit Tests
- [x] Migrate Integration Tests
- [x] Refactor `MongoDBAtlasVectorStore` (autogenerated) to
`MongoDBAtlasVectorSearch`
- [x] ~Remove~ deprecate the old `langchain_community` VectorStore
references.
## Additional Callouts
- Implemented the `delete` method
- Included any missing async function implementations
- `amax_marginal_relevance_search_by_vector`
- `adelete`
- Added new Unit Tests that test for functionality of
`MongoDBVectorSearch` methods
- Removed [`del
res[self._embedding_key]`](https://github.com/langchain-ai/langchain/blob/e0c81e1cb0ede673a69aae6434e17e34868c3bcc/libs/community/langchain_community/vectorstores/mongodb_atlas.py#L218)
in `_similarity_search_with_score` function as it would make the
`maximal_marginal_relevance` function fail otherwise. The `Document`
needs to store the embedding key in metadata to work.
Checklist:
- [x] PR title: Please title your PR "package: description", where
"package" is whichever of langchain, community, core, experimental, etc.
is being modified. Use "docs: ..." for purely docs changes, "templates:
..." for template changes, "infra: ..." for CI changes.
- Example: "community: add foobar LLM"
- [x] PR message
- [x] Pass lint and test: Run `make format`, `make lint` and `make test`
from the root of the package(s) you've modified to check that you're
passing lint and testing. See contribution guidelines for more
information on how to write/run tests, lint, etc:
https://python.langchain.com/docs/contributing/
- [x] Add tests and docs: If you're adding a new integration, please
include
1. Existing tests supplied in docs/docs do not change. Updated
docstrings for new functions like `delete`
2. an example notebook showing its use. It lives in
`docs/docs/integrations` directory. (This already exists)
If no one reviews your PR within a few days, please @-mention one of
baskaryan, efriis, eyurtsev, hwchase17.
---------
Co-authored-by: Steven Silvester <steven.silvester@ieee.org>
Co-authored-by: Erick Friis <erick@langchain.dev>
2024-02-29 23:09:48 +00:00
|
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@deprecated(
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since="0.0.25",
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removal="0.2.0",
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alternative_import="langchain_mongodb.MongoDBAtlasVectorSearch",
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)
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2023-12-11 21:53:30 +00:00
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class MongoDBAtlasVectorSearch(VectorStore):
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"""`MongoDB Atlas Vector Search` vector store.
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To use, you should have both:
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- the ``pymongo`` python package installed
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- a connection string associated with a MongoDB Atlas Cluster having deployed an
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Atlas Search index
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Example:
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.. code-block:: python
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from langchain_community.vectorstores import MongoDBAtlasVectorSearch
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from langchain_community.embeddings.openai import OpenAIEmbeddings
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from pymongo import MongoClient
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mongo_client = MongoClient("<YOUR-CONNECTION-STRING>")
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collection = mongo_client["<db_name>"]["<collection_name>"]
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embeddings = OpenAIEmbeddings()
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vectorstore = MongoDBAtlasVectorSearch(collection, embeddings)
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"""
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def __init__(
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self,
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collection: Collection[MongoDBDocumentType],
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embedding: Embeddings,
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*,
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index_name: str = "default",
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text_key: str = "text",
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embedding_key: str = "embedding",
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2023-12-16 00:49:21 +00:00
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relevance_score_fn: str = "cosine",
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2023-12-11 21:53:30 +00:00
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):
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"""
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Args:
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collection: MongoDB collection to add the texts to.
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embedding: Text embedding model to use.
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text_key: MongoDB field that will contain the text for each
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document.
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embedding_key: MongoDB field that will contain the embedding for
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each document.
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index_name: Name of the Atlas Search index.
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2023-12-16 00:49:21 +00:00
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relevance_score_fn: The similarity score used for the index.
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Currently supported: Euclidean, cosine, and dot product.
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2023-12-11 21:53:30 +00:00
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"""
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self._collection = collection
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self._embedding = embedding
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self._index_name = index_name
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self._text_key = text_key
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self._embedding_key = embedding_key
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2023-12-16 00:49:21 +00:00
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self._relevance_score_fn = relevance_score_fn
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2023-12-11 21:53:30 +00:00
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@property
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def embeddings(self) -> Embeddings:
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return self._embedding
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2023-12-16 00:49:21 +00:00
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def _select_relevance_score_fn(self) -> Callable[[float], float]:
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if self._relevance_score_fn == "euclidean":
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return self._euclidean_relevance_score_fn
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elif self._relevance_score_fn == "dotProduct":
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return self._max_inner_product_relevance_score_fn
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elif self._relevance_score_fn == "cosine":
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return self._cosine_relevance_score_fn
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else:
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raise NotImplementedError(
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f"No relevance score function for ${self._relevance_score_fn}"
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)
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2023-12-11 21:53:30 +00:00
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@classmethod
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def from_connection_string(
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cls,
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connection_string: str,
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namespace: str,
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embedding: Embeddings,
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**kwargs: Any,
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) -> MongoDBAtlasVectorSearch:
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"""Construct a `MongoDB Atlas Vector Search` vector store
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from a MongoDB connection URI.
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Args:
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connection_string: A valid MongoDB connection URI.
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namespace: A valid MongoDB namespace (database and collection).
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embedding: The text embedding model to use for the vector store.
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Returns:
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A new MongoDBAtlasVectorSearch instance.
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"""
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try:
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from importlib.metadata import version
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from pymongo import MongoClient
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from pymongo.driver_info import DriverInfo
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except ImportError:
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raise ImportError(
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"Could not import pymongo, please install it with "
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"`pip install pymongo`."
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)
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client: MongoClient = MongoClient(
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connection_string,
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driver=DriverInfo(name="Langchain", version=version("langchain")),
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)
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db_name, collection_name = namespace.split(".")
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collection = client[db_name][collection_name]
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return cls(collection, embedding, **kwargs)
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def add_texts(
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self,
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texts: Iterable[str],
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metadatas: Optional[List[Dict[str, Any]]] = None,
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**kwargs: Any,
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) -> List:
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"""Run more texts through the embeddings and add to the vectorstore.
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Args:
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texts: Iterable of strings to add to the vectorstore.
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metadatas: Optional list of metadatas associated with the texts.
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Returns:
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List of ids from adding the texts into the vectorstore.
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"""
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batch_size = kwargs.get("batch_size", DEFAULT_INSERT_BATCH_SIZE)
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_metadatas: Union[List, Generator] = metadatas or ({} for _ in texts)
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texts_batch = []
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metadatas_batch = []
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result_ids = []
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for i, (text, metadata) in enumerate(zip(texts, _metadatas)):
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texts_batch.append(text)
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metadatas_batch.append(metadata)
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if (i + 1) % batch_size == 0:
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result_ids.extend(self._insert_texts(texts_batch, metadatas_batch))
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texts_batch = []
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metadatas_batch = []
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if texts_batch:
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result_ids.extend(self._insert_texts(texts_batch, metadatas_batch))
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return result_ids
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def _insert_texts(self, texts: List[str], metadatas: List[Dict[str, Any]]) -> List:
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if not texts:
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return []
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# Embed and create the documents
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embeddings = self._embedding.embed_documents(texts)
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to_insert = [
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{self._text_key: t, self._embedding_key: embedding, **m}
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for t, m, embedding in zip(texts, metadatas, embeddings)
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]
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# insert the documents in MongoDB Atlas
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insert_result = self._collection.insert_many(to_insert) # type: ignore
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return insert_result.inserted_ids
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def _similarity_search_with_score(
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self,
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embedding: List[float],
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k: int = 4,
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pre_filter: Optional[Dict] = None,
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post_filter_pipeline: Optional[List[Dict]] = None,
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) -> List[Tuple[Document, float]]:
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params = {
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"queryVector": embedding,
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"path": self._embedding_key,
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"numCandidates": k * 10,
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"limit": k,
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"index": self._index_name,
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}
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if pre_filter:
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params["filter"] = pre_filter
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query = {"$vectorSearch": params}
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pipeline = [
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query,
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{"$set": {"score": {"$meta": "vectorSearchScore"}}},
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]
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if post_filter_pipeline is not None:
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pipeline.extend(post_filter_pipeline)
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cursor = self._collection.aggregate(pipeline) # type: ignore[arg-type]
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docs = []
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for res in cursor:
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text = res.pop(self._text_key)
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score = res.pop("score")
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docs.append((Document(page_content=text, metadata=res), score))
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return docs
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def similarity_search_with_score(
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self,
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query: str,
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k: int = 4,
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pre_filter: Optional[Dict] = None,
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post_filter_pipeline: Optional[List[Dict]] = None,
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) -> List[Tuple[Document, float]]:
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|
"""Return MongoDB documents most similar to the given query and their scores.
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|
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|
2024-01-24 02:18:28 +00:00
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|
Uses the vectorSearch operator available in MongoDB Atlas Search.
|
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|
For more: https://www.mongodb.com/docs/atlas/atlas-vector-search/vector-search-stage/
|
2023-12-11 21:53:30 +00:00
|
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|
Args:
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|
query: Text to look up documents similar to.
|
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|
|
k: (Optional) number of documents to return. Defaults to 4.
|
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|
pre_filter: (Optional) dictionary of argument(s) to prefilter document
|
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|
fields on.
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|
post_filter_pipeline: (Optional) Pipeline of MongoDB aggregation stages
|
2024-01-24 02:18:28 +00:00
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|
following the vectorSearch stage.
|
2023-12-11 21:53:30 +00:00
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Returns:
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|
List of documents most similar to the query and their scores.
|
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"""
|
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|
embedding = self._embedding.embed_query(query)
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docs = self._similarity_search_with_score(
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embedding,
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k=k,
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pre_filter=pre_filter,
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|
post_filter_pipeline=post_filter_pipeline,
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)
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return docs
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|
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|
def similarity_search(
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|
self,
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|
query: str,
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|
|
|
k: int = 4,
|
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|
|
pre_filter: Optional[Dict] = None,
|
|
|
|
post_filter_pipeline: Optional[List[Dict]] = None,
|
|
|
|
**kwargs: Any,
|
|
|
|
) -> List[Document]:
|
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|
|
"""Return MongoDB documents most similar to the given query.
|
|
|
|
|
2024-01-24 02:18:28 +00:00
|
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|
Uses the vectorSearch operator available in MongoDB Atlas Search.
|
|
|
|
For more: https://www.mongodb.com/docs/atlas/atlas-vector-search/vector-search-stage/
|
2023-12-11 21:53:30 +00:00
|
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|
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|
Args:
|
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|
|
query: Text to look up documents similar to.
|
|
|
|
k: (Optional) number of documents to return. Defaults to 4.
|
|
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|
pre_filter: (Optional) dictionary of argument(s) to prefilter document
|
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|
fields on.
|
|
|
|
post_filter_pipeline: (Optional) Pipeline of MongoDB aggregation stages
|
2024-01-24 02:18:28 +00:00
|
|
|
following the vectorSearch stage.
|
2023-12-11 21:53:30 +00:00
|
|
|
|
|
|
|
Returns:
|
|
|
|
List of documents most similar to the query and their scores.
|
|
|
|
"""
|
2024-01-24 02:18:28 +00:00
|
|
|
additional = kwargs.get("additional")
|
2023-12-11 21:53:30 +00:00
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|
|
docs_and_scores = self.similarity_search_with_score(
|
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|
query,
|
|
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|
k=k,
|
|
|
|
pre_filter=pre_filter,
|
|
|
|
post_filter_pipeline=post_filter_pipeline,
|
|
|
|
)
|
2024-01-24 02:18:28 +00:00
|
|
|
|
|
|
|
if additional and "similarity_score" in additional:
|
|
|
|
for doc, score in docs_and_scores:
|
|
|
|
doc.metadata["score"] = score
|
2023-12-11 21:53:30 +00:00
|
|
|
return [doc for doc, _ in docs_and_scores]
|
|
|
|
|
|
|
|
def max_marginal_relevance_search(
|
|
|
|
self,
|
|
|
|
query: str,
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k: int = 4,
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fetch_k: int = 20,
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lambda_mult: float = 0.5,
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pre_filter: Optional[Dict] = None,
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post_filter_pipeline: Optional[List[Dict]] = None,
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**kwargs: Any,
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) -> List[Document]:
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"""Return documents selected using the maximal marginal relevance.
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Maximal marginal relevance optimizes for similarity to query AND diversity
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among selected documents.
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Args:
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query: Text to look up documents similar to.
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k: (Optional) number of documents to return. Defaults to 4.
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fetch_k: (Optional) number of documents to fetch before passing to MMR
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algorithm. Defaults to 20.
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lambda_mult: Number between 0 and 1 that determines the degree
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of diversity among the results with 0 corresponding
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to maximum diversity and 1 to minimum diversity.
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Defaults to 0.5.
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pre_filter: (Optional) dictionary of argument(s) to prefilter on document
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fields.
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post_filter_pipeline: (Optional) pipeline of MongoDB aggregation stages
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2024-01-24 02:18:28 +00:00
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following the vectorSearch stage.
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2023-12-11 21:53:30 +00:00
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Returns:
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List of documents selected by maximal marginal relevance.
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"""
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query_embedding = self._embedding.embed_query(query)
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docs = self._similarity_search_with_score(
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query_embedding,
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k=fetch_k,
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pre_filter=pre_filter,
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post_filter_pipeline=post_filter_pipeline,
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)
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mmr_doc_indexes = maximal_marginal_relevance(
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np.array(query_embedding),
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[doc.metadata[self._embedding_key] for doc, _ in docs],
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k=k,
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lambda_mult=lambda_mult,
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)
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mmr_docs = [docs[i][0] for i in mmr_doc_indexes]
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return mmr_docs
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|
@classmethod
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def from_texts(
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cls,
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texts: List[str],
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embedding: Embeddings,
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|
metadatas: Optional[List[Dict]] = None,
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|
collection: Optional[Collection[MongoDBDocumentType]] = None,
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|
**kwargs: Any,
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|
|
) -> MongoDBAtlasVectorSearch:
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|
"""Construct a `MongoDB Atlas Vector Search` vector store from raw documents.
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|
This is a user-friendly interface that:
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|
1. Embeds documents.
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|
2. Adds the documents to a provided MongoDB Atlas Vector Search index
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|
(Lucene)
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|
This is intended to be a quick way to get started.
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|
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|
Example:
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|
.. code-block:: python
|
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|
from pymongo import MongoClient
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|
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|
|
from langchain_community.vectorstores import MongoDBAtlasVectorSearch
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|
|
from langchain_community.embeddings import OpenAIEmbeddings
|
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|
|
|
|
|
|
mongo_client = MongoClient("<YOUR-CONNECTION-STRING>")
|
|
|
|
collection = mongo_client["<db_name>"]["<collection_name>"]
|
|
|
|
embeddings = OpenAIEmbeddings()
|
|
|
|
vectorstore = MongoDBAtlasVectorSearch.from_texts(
|
|
|
|
texts,
|
|
|
|
embeddings,
|
|
|
|
metadatas=metadatas,
|
|
|
|
collection=collection
|
|
|
|
)
|
|
|
|
"""
|
|
|
|
if collection is None:
|
|
|
|
raise ValueError("Must provide 'collection' named parameter.")
|
|
|
|
vectorstore = cls(collection, embedding, **kwargs)
|
|
|
|
vectorstore.add_texts(texts, metadatas=metadatas)
|
|
|
|
return vectorstore
|