mirror of https://github.com/kritiksoman/GIMP-ML
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60 lines
2.8 KiB
Matlab
60 lines
2.8 KiB
Matlab
function [curr_dat_sz, curr_lab_sz] = store2hdf5(filename, data, labels, create, startloc, chunksz)
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% *data* is W*H*C*N matrix of images should be normalized (e.g. to lie between 0 and 1) beforehand
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% *label* is D*N matrix of labels (D labels per sample)
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% *create* [0/1] specifies whether to create file newly or to append to previously created file, useful to store information in batches when a dataset is too big to be held in memory (default: 1)
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% *startloc* (point at which to start writing data). By default,
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% if create=1 (create mode), startloc.data=[1 1 1 1], and startloc.lab=[1 1];
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% if create=0 (append mode), startloc.data=[1 1 1 K+1], and startloc.lab = [1 K+1]; where K is the current number of samples stored in the HDF
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% chunksz (used only in create mode), specifies number of samples to be stored per chunk (see HDF5 documentation on chunking) for creating HDF5 files with unbounded maximum size - TLDR; higher chunk sizes allow faster read-write operations
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% verify that format is right
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dat_dims=size(data);
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lab_dims=size(labels);
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num_samples=dat_dims(end);
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assert(lab_dims(end)==num_samples, 'Number of samples should be matched between data and labels');
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if ~exist('create','var')
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create=true;
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end
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if create
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%fprintf('Creating dataset with %d samples\n', num_samples);
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if ~exist('chunksz', 'var')
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chunksz=1000;
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end
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if exist(filename, 'file')
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fprintf('Warning: replacing existing file %s \n', filename);
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delete(filename);
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end
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h5create(filename, '/data', [dat_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [dat_dims(1:end-1) chunksz]); % width, height, channels, number
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h5create(filename, '/label', [lab_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [lab_dims(1:end-1) chunksz]); % width, height, channels, number
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if ~exist('startloc','var')
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startloc.dat=[ones(1,length(dat_dims)-1), 1];
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startloc.lab=[ones(1,length(lab_dims)-1), 1];
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end
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else % append mode
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if ~exist('startloc','var')
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info=h5info(filename);
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prev_dat_sz=info.Datasets(1).Dataspace.Size;
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prev_lab_sz=info.Datasets(2).Dataspace.Size;
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assert(prev_dat_sz(1:end-1)==dat_dims(1:end-1), 'Data dimensions must match existing dimensions in dataset');
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assert(prev_lab_sz(1:end-1)==lab_dims(1:end-1), 'Label dimensions must match existing dimensions in dataset');
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startloc.dat=[ones(1,length(dat_dims)-1), prev_dat_sz(end)+1];
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startloc.lab=[ones(1,length(lab_dims)-1), prev_lab_sz(end)+1];
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end
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end
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if ~isempty(data)
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h5write(filename, '/data', single(data), startloc.dat, size(data));
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h5write(filename, '/label', single(labels), startloc.lab, size(labels));
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end
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if nargout
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info=h5info(filename);
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curr_dat_sz=info.Datasets(1).Dataspace.Size;
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curr_lab_sz=info.Datasets(2).Dataspace.Size;
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end
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end
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